Class will be held in 1060 Bainer, Tuesdays and Thursdays, 10:00–11:50
The lecture slides will be posted
Class January 7 and 9 will be by Zoom
Office Hours week of Jan 6 will be by Zoom by request
Introductory Statistics with R (Textbook: ISwR)
https://cran.r-project.org/bin/windows/base/
https://www.rstudio.com/products/rstudio/
https://rstudio-education.github.io/hopr/starting.html
Statistics for Experimenters, Second Edition.
Box, GEP, Hunter, JS, and Hunter, WG, Wiley, 2005.
January 7. 2025 (Zoom)
Reading: BHH Chapter 1
Presentation: Lecture 1: Introduction to Experimental Design
Note: Class this week will be by Zoom. Link to follow.
Install R and (optionally) R Studio (links above)
Practice using ISwR or the R Studio Education link
January 9, 2025 (Zoom)
Reading: BHH Chapter 1
Presentation: Lecture 2: Introduction to Experimental Design (part 2)
Homework: See end of slides for Lecture 2—submit code and results. Due 1/16/25.
Note: Class this week will be by Zoom. Link to follow.
January 14, 2025
Reading: BHH Chapter 2
Presentation: Lecture 3: R Basics
Homework: See end of slides—Due 1/23/25 (Does not have to be handed in.)
January 16, 2025
Reading: BHH Chapter 2
Presentation: Lecture 4: Regression and Calibration
Homework:
January 21, 2025
Reading:
Presentation: Lecture 5: Introduction to Assays
January 23, 2025
Reading:
Presentation: Lecture 6: Measurement and Analytical Error
Homework: Homework 3: see slides 24 and 25—Due 1/30/25
Currie et al. (1995)
Rocke and Lorenzato (1995)
Wilson, Rocke, Durbin, and Kahn (2004)
zinc data
January 28, 30, 2025
Reading: BHH, Chapters 3 and 4.
Presentation: Lecture 7: Fully Randomized and Randomized Block Designs
Homework: HW 4, due 2/6/25
BHH2 R Package Reference Manual
BHH2 R Package Vignette
BsMD R Package Reference Manual
BHH Data Sets (zip file)
February 4, 2025
Reading:
Presentation: Lecture 8: PCR, Immunoassays, RNA-Seq, Mass Spectrometry
Homework: Homework 3 Comments
February 6, 2024
Reading: BHH, Chapter 5.
Presentation: Lecture 9: Factorial Designs at Two Levels
Homework: HW 5, due 2/28/25
February 11, 2024
Reading: BHH, Chapter 5.
Presentation: Lecture 9: Factorial Designs at Two Levels
Homework: HW 5, due 2/28/25
Homework: Homework 4 Comments
February 13, 2024
Midterm Exam
February 18, 20, 25, 2025
Reading: BHH, Chapter 6.
Presentation: Lecture 10: Fractional Factorial Designs
Midterm Slides
Hellstrand (1989)
Quinlan (1985)
February 25, 2025
Take Home Final Exam: due 3/14/2025
March 6, 2025
Reading: BHH, Chapter 8.
Presentation: Lecture 11: Transformation and Variance
Homework:
March 11, 2025
Reading:
Presentation: Lecture 12: Multiple Comparisons
Homework: